#
# default rose include file for DNA
#

InputType = 4 // DNA
TheAlphabet = "ACGT"
TheFreq = [.25,.25,.25,.25]

TheInsertThreshold = 0.05
TheDeleteThreshold = 0.05

TheInsFunc = [.2,.2,.2,.1,.1,.1,.1]
TheDelFunc = [.2,.2,.2,.1,.1,.1,.1]

TheDNAmodel = "JC"
MeanSubstitution = 0.01342302 // 1 percent mutations for t=1
TransitionBias = 1.0 // reduces K2P to JC
TTratio = 0.0 // reduces F84 to JC

