#
# default rose include file for RNA
#

InputType = 4 // RNA
TheAlphabet = "ACGU"
TheFreq = [.25,.25,.25,.25]

TheInsertThreshold = 0.05
TheDeleteThreshold = 0.05

TheInsFunc = [.2,.2,.2,1,1,1,1]
TheDelFunc = [.2,.2,.2,1,1,1,1]

ThePAMMatrix = [[.97,.01,.01,.01],
                [.01,.97,.01,.01],
                [.01,.01,.97,.01],
                [.01,.01,.01,.97]]

