# rose sample 2

%include dna-defaults

SequenceNum = 8
ChooseFromLeaves = True
TheSequence = "AGTCTGTACTATAATGGGAGGAAAGCC"
TheTree = ((a:2,b:.2):.2,(c:.2,d:.2,e:.2):.2,(f:.2,g:.2):.2,(h:.2,i:.2):.2);
TheMutationProbability = [1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0]
TheDNAmodel = "HKY"
MeanSubstitution = 0.05
TransitionBias = 2.5
TTratio = 2.5
