Serialized Form
atvappletframe
forester.atv.ATVappletFrame atvappletframe
url_string
java.lang.String url_string
message1
java.lang.String message1
message2
java.lang.String message2
exception
boolean exception
treefile
java.io.File treefile
jmenubar
javax.swing.JMenuBar jmenubar
file_jmenu
javax.swing.JMenu file_jmenu
edit_jmenu
javax.swing.JMenu edit_jmenu
view_jmenu
javax.swing.JMenu view_jmenu
options_jmenu
javax.swing.JMenu options_jmenu
help_jmenu
javax.swing.JMenu help_jmenu
open_item
javax.swing.JMenuItem open_item
open_url_item
javax.swing.JMenuItem open_url_item
save_item
javax.swing.JMenuItem save_item
saveas_item
javax.swing.JMenuItem saveas_item
print_item
javax.swing.JMenuItem print_item
close_item
javax.swing.JMenuItem close_item
exit_item
javax.swing.JMenuItem exit_item
remove_root_item
javax.swing.JMenuItem remove_root_item
remove_root_tri_item
javax.swing.JMenuItem remove_root_tri_item
tiny_fonts_item
javax.swing.JMenuItem tiny_fonts_item
small_fonts_item
javax.swing.JMenuItem small_fonts_item
medium_fonts_item
javax.swing.JMenuItem medium_fonts_item
large_fonts_item
javax.swing.JMenuItem large_fonts_item
switch_colors_item
javax.swing.JMenuItem switch_colors_item
view_as_NH_item
javax.swing.JMenuItem view_as_NH_item
view_as_NHX_item
javax.swing.JMenuItem view_as_NHX_item
about_item
javax.swing.JMenuItem about_item
help_item
javax.swing.JMenuItem help_item
atvpanel
forester.atv.ATVpanel atvpanel
contentpane
java.awt.Container contentpane
atvtextframe
forester.atv.ATVtextframe atvtextframe
open_jfilechooser
javax.swing.JFileChooser open_jfilechooser
saveas_jfilechooser
javax.swing.JFileChooser saveas_jfilechooser
atvappletframe
forester.atv_awt.ATVappletFrame atvappletframe
url_string
java.lang.String url_string
message1
java.lang.String message1
message2
java.lang.String message2
exception
boolean exception
treefile
java.io.File treefile
menubar
java.awt.MenuBar menubar
file_jmenu
java.awt.Menu file_jmenu
edit_jmenu
java.awt.Menu edit_jmenu
view_jmenu
java.awt.Menu view_jmenu
options_jmenu
java.awt.Menu options_jmenu
help_jmenu
java.awt.Menu help_jmenu
open_item
java.awt.MenuItem open_item
open_url_item
java.awt.MenuItem open_url_item
save_item
java.awt.MenuItem save_item
saveas_item
java.awt.MenuItem saveas_item
print_item
java.awt.MenuItem print_item
close_item
java.awt.MenuItem close_item
exit_item
java.awt.MenuItem exit_item
remove_root_item
java.awt.MenuItem remove_root_item
remove_root_tri_item
java.awt.MenuItem remove_root_tri_item
tiny_fonts_item
java.awt.MenuItem tiny_fonts_item
small_fonts_item
java.awt.MenuItem small_fonts_item
medium_fonts_item
java.awt.MenuItem medium_fonts_item
large_fonts_item
java.awt.MenuItem large_fonts_item
switch_colors_item
java.awt.MenuItem switch_colors_item
view_as_NH_item
java.awt.MenuItem view_as_NH_item
view_as_NHX_item
java.awt.MenuItem view_as_NHX_item
about_item
java.awt.MenuItem about_item
help_item
java.awt.MenuItem help_item
atvpanel
forester.atv_awt.ATVpanel atvpanel
contentpane
java.awt.Container contentpane
d
java.awt.Dialog d
url_tf
java.awt.TextField url_tf
url_string
java.lang.String url_string
id
long id
taxo_id
int taxo_id
bootstrap
int bootstrap
sum_ext_nodes
int sum_ext_nodes
indicator
int indicator
x
int x
y
int y
duplication
boolean duplication
seq_name
java.lang.String seq_name
ec_number
java.lang.String ec_number
species
java.lang.String species
orig_seq_name
java.lang.String orig_seq_name
distance_parent
double distance_parent
lnL_on_parent_branch
double lnL_on_parent_branch
lnL_on_parent_branch_assigned
boolean lnL_on_parent_branch_assigned
significantly_worse
boolean significantly_worse
bl_of_seq_on_parent_branch
double bl_of_seq_on_parent_branch
duplication_or_spec_assigned
boolean duplication_or_spec_assigned
collapse
boolean collapse
next_ext_node
Node next_ext_node
prev_ext_node
Node prev_ext_node
child1
Node child1
child2
Node child2
parent
Node parent
link
Node link
ext_node0
Node ext_node0
root
Node root
highest_lnL
double highest_lnL
lowest_lnL
double lowest_lnL
longest_distance
double longest_distance
number_of_branches
int number_of_branches
external_nodes
int external_nodes
most_branches_per_ext_node
int most_branches_per_ext_node
rooted
boolean rooted
more_than_bin_nodes_in_NH
boolean more_than_bin_nodes_in_NH
name
java.lang.String name
atvappletframe
forester.atv_awt.ATVappletFrame atvappletframe
url_string
java.lang.String url_string
message1
java.lang.String message1
message2
java.lang.String message2
exception
boolean exception
atvappletframe
forester.atv.ATVappletFrame atvappletframe
url_string
java.lang.String url_string
message1
java.lang.String message1
message2
java.lang.String message2
exception
boolean exception