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java.lang.Object | +--forester.tools.SDI
Constructor Summary | |
SDI()
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Method Summary | |
static int |
assign(Tree gene_tree,
Tree species_tree)
Determines for each Node of a gene Tree (gene_tree) whether it represents a speciation or duplication event. |
static int |
stripTree(Tree reference,
Tree to_be_stripped)
Removes from Tree to_be_stripped all external Nodes which are assocaited with a species not found in Tree reference. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public SDI()
Method Detail |
public static int assign(Tree gene_tree, Tree species_tree) throws java.lang.Exception
gene_tree
- a gene Treespecies_tree
- a species Treepublic static int stripTree(Tree reference, Tree to_be_stripped)
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