forester v1.2

Serialized Form


Package forester.atv

Class forester.atv.ATVjapplet implements Serializable

Serialized Fields

atvappletframe

forester.atv.ATVappletFrame atvappletframe

url_string

java.lang.String url_string

message1

java.lang.String message1

message2

java.lang.String message2

exception

boolean exception

Class forester.atv.ATVjframe implements Serializable

Serialized Fields

treefile

java.io.File treefile

jmenubar

javax.swing.JMenuBar jmenubar

file_jmenu

javax.swing.JMenu file_jmenu

edit_jmenu

javax.swing.JMenu edit_jmenu

view_jmenu

javax.swing.JMenu view_jmenu

options_jmenu

javax.swing.JMenu options_jmenu

help_jmenu

javax.swing.JMenu help_jmenu

open_item

javax.swing.JMenuItem open_item

open_url_item

javax.swing.JMenuItem open_url_item

save_item

javax.swing.JMenuItem save_item

saveas_item

javax.swing.JMenuItem saveas_item

print_item

javax.swing.JMenuItem print_item

close_item

javax.swing.JMenuItem close_item

exit_item

javax.swing.JMenuItem exit_item

remove_root_item

javax.swing.JMenuItem remove_root_item

remove_root_tri_item

javax.swing.JMenuItem remove_root_tri_item

tiny_fonts_item

javax.swing.JMenuItem tiny_fonts_item

small_fonts_item

javax.swing.JMenuItem small_fonts_item

medium_fonts_item

javax.swing.JMenuItem medium_fonts_item

large_fonts_item

javax.swing.JMenuItem large_fonts_item

switch_colors_item

javax.swing.JMenuItem switch_colors_item

view_as_NH_item

javax.swing.JMenuItem view_as_NH_item

view_as_NHX_item

javax.swing.JMenuItem view_as_NHX_item

about_item

javax.swing.JMenuItem about_item

help_item

javax.swing.JMenuItem help_item

atvpanel

forester.atv.ATVpanel atvpanel

contentpane

java.awt.Container contentpane

atvtextframe

forester.atv.ATVtextframe atvtextframe

open_jfilechooser

javax.swing.JFileChooser open_jfilechooser

saveas_jfilechooser

javax.swing.JFileChooser saveas_jfilechooser


Package forester.atv_awt

Class forester.atv_awt.ATVapplet implements Serializable

Serialized Fields

atvappletframe

forester.atv_awt.ATVappletFrame atvappletframe

url_string

java.lang.String url_string

message1

java.lang.String message1

message2

java.lang.String message2

exception

boolean exception

Class forester.atv_awt.ATVframe implements Serializable

Serialized Fields

treefile

java.io.File treefile

menubar

java.awt.MenuBar menubar

file_jmenu

java.awt.Menu file_jmenu

edit_jmenu

java.awt.Menu edit_jmenu

view_jmenu

java.awt.Menu view_jmenu

options_jmenu

java.awt.Menu options_jmenu

help_jmenu

java.awt.Menu help_jmenu

open_item

java.awt.MenuItem open_item

open_url_item

java.awt.MenuItem open_url_item

save_item

java.awt.MenuItem save_item

saveas_item

java.awt.MenuItem saveas_item

print_item

java.awt.MenuItem print_item

close_item

java.awt.MenuItem close_item

exit_item

java.awt.MenuItem exit_item

remove_root_item

java.awt.MenuItem remove_root_item

remove_root_tri_item

java.awt.MenuItem remove_root_tri_item

tiny_fonts_item

java.awt.MenuItem tiny_fonts_item

small_fonts_item

java.awt.MenuItem small_fonts_item

medium_fonts_item

java.awt.MenuItem medium_fonts_item

large_fonts_item

java.awt.MenuItem large_fonts_item

switch_colors_item

java.awt.MenuItem switch_colors_item

view_as_NH_item

java.awt.MenuItem view_as_NH_item

view_as_NHX_item

java.awt.MenuItem view_as_NHX_item

about_item

java.awt.MenuItem about_item

help_item

java.awt.MenuItem help_item

atvpanel

forester.atv_awt.ATVpanel atvpanel

contentpane

java.awt.Container contentpane

d

java.awt.Dialog d

url_tf

java.awt.TextField url_tf

url_string

java.lang.String url_string


Package forester.tree

Class forester.tree.Node implements Serializable

Serialized Fields

id

long id

taxo_id

int taxo_id

bootstrap

int bootstrap

sum_ext_nodes

int sum_ext_nodes

indicator

int indicator

x

int x

y

int y

duplication

boolean duplication

seq_name

java.lang.String seq_name

ec_number

java.lang.String ec_number

species

java.lang.String species

orig_seq_name

java.lang.String orig_seq_name

distance_parent

double distance_parent

lnL_on_parent_branch

double lnL_on_parent_branch

lnL_on_parent_branch_assigned

boolean lnL_on_parent_branch_assigned

significantly_worse

boolean significantly_worse

bl_of_seq_on_parent_branch

double bl_of_seq_on_parent_branch

duplication_or_spec_assigned

boolean duplication_or_spec_assigned

collapse

boolean collapse

next_ext_node

Node next_ext_node

prev_ext_node

Node prev_ext_node

child1

Node child1

child2

Node child2

parent

Node parent

link

Node link

Class forester.tree.Tree implements Serializable

Serialized Fields

ext_node0

Node ext_node0

root

Node root

highest_lnL

double highest_lnL

lowest_lnL

double lowest_lnL

longest_distance

double longest_distance

number_of_branches

int number_of_branches

external_nodes

int external_nodes

most_branches_per_ext_node

int most_branches_per_ext_node

rooted

boolean rooted

more_than_bin_nodes_in_NH

boolean more_than_bin_nodes_in_NH

name

java.lang.String name


Class forester.atv_awt.ATVapplet implements Serializable

Serialized Fields

atvappletframe

forester.atv_awt.ATVappletFrame atvappletframe

url_string

java.lang.String url_string

message1

java.lang.String message1

message2

java.lang.String message2

exception

boolean exception


Class forester.atv.ATVjapplet implements Serializable

Serialized Fields

atvappletframe

forester.atv.ATVappletFrame atvappletframe

url_string

java.lang.String url_string

message1

java.lang.String message1

message2

java.lang.String message2

exception

boolean exception


forester v1.2