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Class Summary |
| DistanceCalculator |
|
| DoRIO |
|
| Int |
|
| NameAndValues |
|
| OE |
Implements Oliver Eulenstein's algorithm for speciation - duplication inference. |
| RIO |
|
| SDI |
Abstract class from with classes SDIse and OE inherit. |
| SDIdirectory |
Allows to infer duplications - speciations on all (rooted or unrooted) gene trees in
a directory by using method "infer" of class SDIunrooted. |
| SDIse |
Implements our algorithm for speciation - duplication inference (SDI). |
| SDIunrooted |
Allows to infer duplications - speciations on a unrooted gene tree. |
| transfersBranchLenghts |
|