ER, Fri Nov 30 09:01:01 EST 2012


ate: Fri, 30 Nov 2012 05:00:47 -0500
From: Haruka YONEMOTO <yonemoto_haruka@cb.k.u-tokyo.ac.jp>
To: Elena Rivas <rivase@janelia.hhmi.org>
Subject: Bug Report for TORNADO
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   1.2 Shown   ~29 lines  Text (charset: ISO-8859-1)
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Dear Dr. Rivas,

I'm Haruka, a graduate student, who previously reported the bug for TORNADO.  Thank you for your quick response and fixing bugs at that time.

I hesitated to email such things, but today I would like to tell you that I got an error message in using "grm-train". The following lines are the command line I used
and the error message after the execution:

--------------------
./grm-train --count --bwe --TEL basic_grammar.grm input.txt output.txt fc_file.txt
assign_count_disegment_atom(): wrong boundaries l=388
---------------------

This error occurs at line 643 in the file "grm_parsetree.c" but I couldn't find the causes of this error. This function is actually hugely related to our analysis
which we nearly finishes for staring to write our manuscript. I would be very happy if you have the time to fix the error.

The files used for the function are attached, I hope that they would help the improvement of your software package...

Thank you very much in advance,
Yours sincerely,
Haruka.
-----------------------
Haruka YONEMOTO
Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo
Email : yonemoto_haruka@cb.k.u-tokyo.ac.jp 

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